- Episode 2.02 - Otis [Airing August 28]: A young woman named Debra Jean puts up a notice to get a ride-mate to share expenses and driving for a trip to Utah. Tweener seizes the opportunity. Debra Jean will recur in four episodes. Franklin and Kellerman are questioned about the escape by a three-person judicial board. Kellerman and Franklin get angry when a former prison employee reveals that he knew about the escape plan. Later, the judicial board gives Kellerman and Franklin their "sentence." We meet Bellick's mother. It is announced that a hundred thousand dollar apiece will be given as a reward for every convict someone brings in. If Lincoln is brought back in, the reward is three hundred thousand dollars. We will see some flashbacks, including one with Westmoreland.
- Episode 2.03 - Scan [Airing September 4]: Michael and Lincoln experience car trouble as Mahone's pursuit of them goes up in flames; Sucre hits the road to stop Maricruz from taking a gamble; C-Note is determined to reunite with his wife and daughter despite their surveillance; a familiar face keeps a close eye on Sara, who finds the tables turned on her; determined to cash in on the prison break, Bellick partners with an unlikely ally.
- Episode 2.04 - First Down: Abruzzi is reunited with his wife Sylvia. She is outraged when Abruzzi tells her he wants to get revenge before leaving the States and start a new life with his family. T-Bag travels with a man named Jerry and his cute 14-year-old girl, Danielle. When a lonely and horny T-Bag tries to get his way with the girl, she runs to her father and a confrontation ensues.
- Episode 2.05 - Map 1213: One of the President's agents, named Bill Kim, is sent unannounced to Fox River in order to check up on the investigation's progress. Kellerman particularly likes Kim for his way of working. Kim is especially interested in Sara's whereabouts and her contacts. Sucre, who is in Las Vegas, finds the chapel where Maricruz is set to wed Hector. Maricruz's sister Theresa promises to have her sister and Sucre meet, however, she decides to call the police instead.
- Episode 2.06: T-Bag is in the house of a woman named Jeannette, who serves him liquored lemonade. As they share stories, T-Bag starts working his charm on her only to be scorned when she asks him for help to get another man in her bed. It seems the gang, which includes Michael and Sucre, is pretending to be construction workers working on Jeanette's house. Why are they there for? Things go sour when Jeannette's daughter, Ann, appears.